Tag Archives: microscopy

Beyond the 2D Bounding Box: Why Bioimage Deep Learning Is a Completely Different Beast and How BiaPy Tames It

By | August 24, 2026

https://github.com/lynchaos/biapy-hub https://lynchaos-biapy-hub-app-hlcmfj.streamlit.app/ If you have spent your machine learning career optimizing ResNets or YOLO on ImageNet and COCO, here is an inconvenient truth: standard computer vision has spoiled you. In standard computer vision, a batch is usually an RGB triplet where . The pixels are isotropic, the spatial coordinates are Euclidean, the lighting is roughly… Read More: Beyond the 2D Bounding Box: Why Bioimage Deep Learning Is… »

Building a fake microscope: simulating a yeast wet mount

By | August 1, 2026

Repository: github.com/lynchaos/generative-microscopy Why this sketch I wanted to find out whether I could make something that genuinely looked like microscopy footage. Not cells bouncing around a canvas, but Saccharomyces cerevisiae behaving the way it actually behaves under a coverslip, seen through real glass and real light. The sketch began life as a generic n-body attraction… Read More: Building a fake microscope: simulating a yeast wet mount »

CellSeg v0.1.0 is out

By | May 8, 2026

Three months ago I started building an Android app to count cells. Today the first public build is up, and I’d like to introduce it properly. It’s called CellSeg, and it does one stubborn small thing: it lets a bench scientist take a picture of a microscopy sample with their phone and get a cell… Read More: CellSeg v0.1.0 is out »

The bench problem that wouldn’t go away

By | May 7, 2026

There’s a thing that happens in a tissue culture lab that I’ve never quite gotten used to, even after years of doing it. You pull a sample from a flask or a bioreactor, you load it onto a counting chamber, you put your eye to the microscope, and then you spend the next several minutes… Read More: The bench problem that wouldn’t go away »