Part 4 of 5. Right now SimurgArray lives in a private repository on my own Git server. It has a license, a changelog, a user guide, wheels, a Docker image and a version number that just became 2.0.0. In other words, it looks public. It is not, yet. Publishing code is easy. Publishing it responsibly… Read More: SimurgArray going public: what it takes, and a calendar »
Part 3 of 5. “Benefit to humanity” is a big phrase for a tool that mostly reads binary files. I will try to keep this post the right size. SimurgArray will not cure anything. What it can do is lower a few barriers that currently decide who gets to do genetics research and how much… Read More: SimurgArray: What good could it do? »
Part 2 of 5. Whenever someone tells me they are writing their own genotype caller, my first instinct is to ask whether they have looked around. So it is only fair that I answer the same question about myself. I did look around. There is a lot of good work out there. Some of it… Read More: Are there SimurgArray alternatives? Yes. Why build it anyway? »
Part 1 of 5. Every genotyping array tells a small story before it tells you anything about DNA. A glass slide goes into a scanner, the scanner writes two IDAT files per sample (one red, one green), and a few hundred thousand bead intensities wait for someone to turn them into genotypes. That someone is… Read More: Why SimurgArray should exist? »
https://github.com/lynchaos/biapy-hub https://lynchaos-biapy-hub-app-hlcmfj.streamlit.app/ If you have spent your machine learning career optimizing ResNets or YOLO on ImageNet and COCO, here is an inconvenient truth: standard computer vision has spoiled you. In standard computer vision, a batch is usually an RGB triplet where . The pixels are isotropic, the spatial coordinates are Euclidean, the lighting is roughly… Read More: Beyond the 2D Bounding Box: Why Bioimage Deep Learning Is… »
What happens when a bioreactor engineer points his state-estimation toolkit at football. Model90 is a statistical forecasting engine for the 2026 World Cup and the major leagues, built on Dixon-Coles Poisson, Elo, xG and a calibrated meta-model. An honest look at how it works and what its Brier score really means.
A small, cracker-themed block puzzle I cloned and polished for my four-year-old — built in plain vanilla JavaScript with synthesised audio, a Three.js bloom backdrop, and a deliberately forgiving combo system. Free to play, open source on GitHub.
Three months ago I started building an Android app to count cells. Today the first public build is up, and I’d like to introduce it properly. It’s called CellSeg, and it does one stubborn small thing: it lets a bench scientist take a picture of a microscopy sample with their phone and get a cell… Read More: CellSeg v0.1.0 is out »